PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016487511.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 396aa    MW: 44392.6 Da    PI: 8.6379
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016487511.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.7e-066082123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y C++C++ F r  nL+ H r+H
  XP_016487511.1 60 YICEICNQGFQRDQNLQMHRRRH 82
                    89********************9 PP

2zf-C2H216.62.2e-05138159223
                     EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                      C++C+k +  +s++k H++t+
  XP_016487511.1 138 ICEKCSKAYAVQSDYKAHLKTC 159
                     7*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.04E-65982No hitNo description
PROSITE profilePS5015710.8666082IPR007087Zinc finger, C2H2
SMARTSM003550.00656082IPR015880Zinc finger, C2H2-like
PROSITE patternPS01359062142IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355190101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.6E-5128158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.04E-6132157No hitNo description
SMARTSM0035557137164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MLDNSCSSPV GPSSSSEAFN NSAENSGVSN RRKRRPAGTP DPDAEVVSLS PKTLLESDRY  60
ICEICNQGFQ RDQNLQMHRR RHKVPWKLVK RETPQVKKRV FVCPEPTCLH HDPCHALGDL  120
VGIKKHFRRK HSNNKQWICE KCSKAYAVQS DYKAHLKTCG TRGHSCDCGR VFSRVESFIE  180
HQDSCTVRRS SSTRPDLQPL QAGCSSRTAS STSPSSDTNF SSIAPNLPRL TIMPLPNNSD  240
QHNEFPSSNN NDQQHNLELR LLPSSIACPS RTNDHENQAP HLKLSIGSST RVVSKDHKEL  300
NLAMAEKAYA EEARRQAKRQ IEFAELEFAN AKRIRQQAQA EIERAQNLKE EATKRISSSI  360
LEITCHACKN KFQATDESSP AMSYMSSATT EAEGEH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009775158.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
RefseqXP_016487511.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
SwissprotF4IPE31e-154IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLB9HJL40.0B9HJL4_POPTR; Zinc finger family protein
STRINGPOPTR_0008s13980.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10222482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-139indeterminate(ID)-domain 14